A biomedical genomics center of excellence based on Next Generation Sequencing technology (NGS), focusing on whole genome sequencing and its applications in identifying (individual) structural genomic variations, gene expression, epigenetics, and meta-genomics. The center includes the necessary bioinformatics infrastructure and expertise to analyze the produced datasets.
The center includes the Ion Proton as well as the Ion PGM Sequencing Platforms, with equipment for high throughput DNA extraction, DNA processing, Read More ...
The center can run whole genome sequencing, exome sequencing, as well as sequencing of gene panels. It can also run RNAseq sequencing experiments Read More ...
The sequencing experiments can be used to identify point mutations and larger structural variations against a reference genome. It can also be used to Read More ...
Identification of different variants compared to a reference genome. It includes the steps of read mapping, variant analysis, and variant annotation. Large indels can also be detected using CNV algorithms.
Analysis of a sample, including mix of micro-organisms: The analysis workflow includes the steps of read assembly, read alignment to nucleotide databases, and taxa identification and quantization.
Analysis of mRNA data: The analysis workflow includes the steps of aligning the reads to a reference genome, assembly of mapped reads into transcripts, and measuring relative expression levels.